Scaffold Ga0132258_10024039

Overview

Basic Information

• Taxon OID: 3300015371
• Scaffold ID: Ga0132258_10024039
• Source Dataset Name: Combined assembly of cpr5 and col0 rhizosphere and soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13398
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location

• Location Name: University of North Carolina
• Coordinates
  • Lat. (^o): 35.9
  • Long. (^o): -79.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010872	Metagenome / Metatranscriptome	298	Y
F033479	Metagenome / Metatranscriptome	177	Y
F054961	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0132258_100240395	F033479	N/A	MAVLLAITLTGCAAASSSLVHGMTAPNPSGCYIQVFDGERLRGTKDFINGPMGYGTLSHLPNGADWARRIRSVEVGPAATATLWTGPNRTGRSMVLRLDRPYFTLPADFSGKVQSMDLRCDDTRIVHTPEPNAIAAAK*
Ga0132258_100240397	F054961	N/A	MPRHVNAVVAVFAACTLPIAAAVADAQTEHRFAPGTPPISVRPSALALMVSEIAGTPVNVPHARILWVVDAHAIVIESDSLFEPTWRDHSRVLVVLERSRSLAIPNPPVAISPVDVTGIARTLLGIQASQDVPWPRALTRREIERMDIKAAILASSVRTSDGVELTLSAAP*
Ga0132258_100240398	F010872	N/A	VAQWNPYDPPRDPKHVDVSGTAGFRLSTDWSDMILLGSVSPATGALEQVLGRDLIMRPGPVYDATVTYWEGRYGFRAHGGFSQKCLAVAGQCGPIPTLNGPTRGSVGIDASSYDVGGAFGLMEYHHNPWVWPYVFFGFGGITYNIKQNISPPLQMFIERRPPANADITVQENKGRDQSLLIAIDELGLETKFALNFGVGTDLRVPLGAAGIGLRLELSDNMHASPLNIQVAELNTVTDDVVRANGGLVHNLRASAGLVLHFGH*