Scaffold Ga0163144_10180773

Overview

Basic Information

• Taxon OID: 3300015360
• Scaffold ID: Ga0163144_10180773
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3002
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046120	Metagenome / Metatranscriptome	151	Y
F098742	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163144_101807734	F098742	GGA	MNFLDSNPYLPMDSIGMYKAATCPIHLCNDDPYEELLHNVDEVETLLQDPVVLAAIHRLLDPDADLDELRVSALQSEAISPKERALPWFSRRALKRLPTWDLWHKNKLEQLDQMKALGMSGSPIKLPEGGILMRFHWQH*
Ga0163144_101807735	F046120	GAG	MTRRAYDKLELPDFDLDDNLGEDYFPPGDDLERDSSMTSSQKTNEFGTDYVPMIGTKINKDFGSKGFFEGQVVPGPHNVTVKGDDIVVWKVRYEDGDREEMTASEIAYWKAPVEEVQTSKPKSKSKPTRLKKTVATKPSGDQSEELEDALPKPRKDASAPTHLR*