Scaffold Ga0163144_10009648

Overview

Basic Information

• Taxon OID: 3300015360
• Scaffold ID: Ga0163144_10009648
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20709
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001131	Metagenome / Metatranscriptome	768	Y
F078872	Metagenome	116	Y
F085655	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163144_1000964813	F001131	N/A	VRRERDLPEPLVWTFDGPFARCLADLEDTLRRALVMVGGVSGVVLLIDLSLPALQRRVAAGDALQPGWGRFQERLAGYGLPSLPRVRHLRSEGPLATLVIAYRN*
Ga0163144_100096483	F085655	GAG	MKTSPIPADEWRDRCASRIRELDLKITDSEAETVAQDVYDFERTRSMQPEEAADFVAEQMSKAEPPRFERRSKDRAENAPFMRSLMRFLTEPKNAS*
Ga0163144_100096486	F078872	AGGAG	LIAVRAWLASAGWACLSGTAAMLFLTVSLVGLFVVFFGALISAMLTPLLLLLPADWQWTGWQWLAIGLGIWLAVVVLLGAIARWAWLRCRAVVFVGPPWARTASIVAGAVAAFVLLAVVPGLGTPLLPQVTPSPEPERDDPITV*