Scaffold Ga0163144_10000818

Overview

Basic Information

• Taxon OID: 3300015360
• Scaffold ID: Ga0163144_10000818
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73768
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (71.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042607	Metagenome	158	Y
F091043	Metagenome	108	Y
F094469	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163144_1000081813	F091043	N/A	MSLSIFLYFAMETIHNNITCFFEEKLSDLQCRQDTKAYIISIYGKYKSASFDLSKDSVTLLFAQARSKHDFSTYQNLGDWIFFINTLAPNHLKDASKEYYDAVAKSSYYSCYTIIDKQWRLFEELSDNFTILEAEVKKRLKILHF*
Ga0163144_1000081845	F042607	AGGAG	MSMRIIDNKKIDLTDDEWTMYENIVKSYTTATNKGEDLFIDLFETGPDGIIVYLKPPSKFRTSFEVFLYLMSIMQHQHLRQMYKKVDDVCAQMKQKIDSIK*
Ga0163144_1000081846	F036462	GGA	MEKKVVTLADIVGDDLEEEFSKFDLTEIQAVLIRLSDVDAIDIAHAELLQQQALRGADILCGYLGKIVKTVGYLEARVNSTKNKASLDYQAPEGKTTADMKKWAGESSSVVEDIQIKLAKAKGSKLVLEKKYDILIKSHHHYKDIAAGLRKTILGYSPGAGVPSEKVPEGYE*
Ga0163144_1000081860	F038776	N/A	MGDVMSNFKIDYSGLADRVTKRAYKLEDVKNQIEKVAFDIVRFKDGDKGADLWQVQSADDGEQYIVSLYELEAEVKTSADWSVTISKTAGEIQVSYKGDPLVRIASSRLGIPVSELHKVESYLPSKLAENKKLVKALLNELNKSAKEEVLSKYPELV*
Ga0163144_1000081866	F094469	N/A	MNKTALKKILDHPDKDEIISKLVIGISPSDIHDWLKAKYTNVGEAKFVIAEKSVKQFQENYLDIYNMIREDLSKTKSALALSTEDQLELSVKGNSAYKNRMLELAGKELDIKTMITNLCVAVETRLGQIFDEIQEDPRNINTRVDRLLIEYADTLGSVLEKYYKLTTVQPDQIVQHNVTLQVVDQHISVFHDVIKEVLSQMDLDTSLYFMEVFNDKMAKLKQPSAAEVPNTDMRLVEAKVLNETINKKINE*