Scaffold Ga0163144_10000094

Overview

Basic Information

• Taxon OID: 3300015360
• Scaffold ID: Ga0163144_10000094
• Source Dataset Name: Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 202609
• Total Scaffold Genes: 217
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 147 (67.74%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Lake Vanda, McMurdo Dry Valleys
• Coordinates
  • Lat. (^o): -77.5281
  • Long. (^o): 161.59
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038776	Metagenome / Metatranscriptome	165	Y
F040370	Metagenome	162	Y
F065185	Metagenome	128	Y
F069394	Metagenome	124	Y
F071164	Metagenome	122	Y
F085609	Metagenome	111	Y
F103138	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163144_10000094103	F085609	GAGG	MQNKVVAEAVRVEYEEKTGKMYIVFEVKDEKYKQDLKKNWTKDIEFRLVDKLLVEGE*
Ga0163144_10000094112	F103138	N/A	MKGTILLNHNENTKKVEDEEKTRYLRGLLEQMGVPVQEFWTSDGPLSVDQKIKLRGILATYNIQVIDDLDGHMQVYVEGEKVAEWFKCTYKLKRDLREIDPRKQLYLEMEVNCWSLFEESEQEQ*
Ga0163144_10000094117	F065185	AGG	VKIEFEDKSYIEVTKSDNPGKVIVVISAKDHENPLKRIVNAVEVTVEQFKKLVSEVS*
Ga0163144_1000009420	F069394	AGGAGG	MIKKAYAVQMTYDVSDDEKQQAQRALLFFGHTNKLLEMASDHLDIMKTPFKDNPEMDPKEVVKARAAIRRFRDKSVENFNVFKKEAFKCVNVMQPFSTDTQTLKLMKSFITSIDGLETKVNQFSELFNDLESKSFSQDIVKNIEGIQEECKDLSEIIDERIKSHIQSNILATSWVDNVSNDLQMQIEEKTPLIMDLFNKRQDNLNEAIKERTSQEGN*
Ga0163144_100000943	F038776	GGAG	MSKFQLDYSGLENKVYKKAYRLNDVKDQLETVAFDIVRFKDNDKGADLWQVQSSDDGDYIVSLYQPDEDVKVAALWEVLVSKTAGDLQISYKGDPLVRVSASQMGIPRTELSQVESYLPAKLASNKKLVKALLNELPESAKKEVLSKYPELV*
Ga0163144_100000946	F071164	GAGG	MRISEMLTAIASWLESPNNEAMLLAEYHEDSAKVVAESCVLAAALLKNAALEVSDMEPPEPSKITPEAIEEIAALAAAFDASGDPQLKKQASVLDELLMSVAAPPNAYAARKDLEDKRIEDLKKKYEDPSKELRDVNKIADSEKAIEKSEMTKNYKIMEAPLSSRYCPDHPGVQIARVGEHLWQCELDKKSYNYETGFELNNGAKVPGGDVSQQTQGVDVPSHAIFDTREGRLGSNRS*
Ga0163144_1000009471	F040370	AGG	MSTNNFFKSNLMGLHNFVQASMLVFPKEIIISTLRDFFSKDDYYHFSKDQWGFANTTDHTDLPPGADIPTQHNANGANQEGLSTRIYIGENYRKDGIFYPAVLVKSGGSKSVPISINREQESIQYEDIIYEDGYGNETIVHRPHSFITAGVWEGTIIIDVMSRSLRARDDIAEAIAMCFTEVTFETIEDIGIIIKPISIGAASEGDDRNDKLFRQTLTLDIRTEWRREIPVGNVIDAIFFTVTFEELSSPGTPVPANLTANTDVSLSDMLLNM*