NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134085_10114711

Scaffold Ga0134085_10114711


Overview

Basic Information
Taxon OID3300015359 Open in IMG/M
Scaffold IDGa0134085_10114711 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013177Metagenome273N
F045649Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0134085_101147112F045649AGGAGGVTDSRIILRLALGVLCGVVLVLLPAVFSAGPTANPSTSSTQNFGRASGPVTLAPAAASFFGLDNATLGGLSLLTIILFIFLPSTIFSILVRRWAEKKAHDYLE*
Ga0134085_101147113F013177AGGMFFNILGGSLTLLSVQLPWMTINGTYPVSVESGGIFAVIFYWALAGAILSFLSRFGGAMTLVGLIGFMGEPYISYRLANPGLGVLLAFAGAILTFAGVRWSIPSEIVRGHEIVGGILYSVGFLIILTIVISSFIYGGLSATGSSQLIVGAPLLLVGILMTGLGLKLFLAPERRKKLSAY*

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