Scaffold Ga0182167_1055774

Overview

Basic Information

• Taxon OID: 3300015354
• Scaffold ID: Ga0182167_1055774
• Source Dataset Name: Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000199	Metagenome / Metatranscriptome	1639	Y
F062364	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182167_10557741	F000199	GGA	MELGAKRSELVQKFVPRSRVGVYHDERTRSTPLDPKLMFWCVLYHLGAFGTVWLPYETRCKTG
Ga0182167_10557742	F062364	N/A	MNPLDALHWCLNSCLGAFRTVWVFLRPFGCLTKLGAKRSEQVQKFVPRSRVEIFWNESTRSTPWDPKLMFCCISYHLDPFGTAWLPYETLGKTDRTSAKVRTTKSSLIFFPTNAPNPPHWSLNSCFSAFHTILVHLRPFGCLAKLGAKRSELVQKFVPQSRVGILRNERTRSASLDTKLLFCCVLYHLGAFGTVKLPYETRGKMFRTSAKVRATKSRRYFLQRIHSIHPILP*
Ga0182167_10557743	F000199	N/A	GLLSCLMELGAKHSELVQKFVPRSRFEILRNERTRSTPMDPKLLFCCVLYHLGAFGTVKLPDKTRGKMFRTSAKVHATNRVGFFLRRTHPIHPIVL*