Scaffold Ga0182177_1027339

Overview

Basic Information

• Taxon OID: 3300015347
• Scaffold ID: Ga0182177_1027339
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_01AUG2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1130
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000755	Metagenome	905	Y
F007795	Metagenome	344	Y
F016482	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182177_10273391	F000755	N/A	MEPLAEENKKLQETMNLYEKNIQRAQRERDLAESNSWDLEH*
Ga0182177_10273392	F016482	N/A	VITILLAEQDAELGQLRKTVEQIQQEKAKESKRANILAEELKGEYLLVGITVEVFFWYDRTL*
Ga0182177_10273393	F007795	AGG	VLVQEAQVQKDNFNAVVTAIKLVLDCVDPETAPRLDGRRQGSDTIIQRCKAAWENFNIFNRDAIMTVATHVLAVVQSHYPTIDVQSIGGDFAKGLSDAETQKLEDEVEDAAKKLAGDIDLFGETDGSDVAQ*