NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182117_1105372

Scaffold Ga0182117_1105372


Overview

Basic Information
Taxon OID3300015332 Open in IMG/M
Scaffold IDGa0182117_1105372 Open in IMG/M
Source Dataset NameSwitchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009118Metagenome / Metatranscriptome322Y
F009664Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0182117_11053721F009118N/AMHLDTNFRNGSGAATKWCETIQNMSFRSKVLDWVCLLLKTRNGSRG
Ga0182117_11053722F009664N/AIEIFQGVCLELYYFETLNQTHTDTSFRNGSGSSTEWRETTENMCFGPKVVDWAGSLLENKKQFWRHKLVQ*

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