NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182158_1017715

Scaffold Ga0182158_1017715


Overview

Basic Information
Taxon OID3300015305 Open in IMG/M
Scaffold IDGa0182158_1017715 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_12JUL2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026778Metagenome196Y
F052346Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0182158_10177151F026778GGAGGMEALQGQDAQEDSPTVVHLTTYLLALDEQYDRQALELRICLRRAEEAEIFTRMLEVQLAESHASAAAAESRETAMLEALKEAKDQHVHQLYATYLVTRAKRRTLAAERQDASILEGIPIHPLERRRTGVAVPPAPPPSKVSEVEPLI
Ga0182158_10177152F052346N/AMAGAWVSSYCLNVEGFPRTLQKLGVKDHPEYEGREYEEHGTERCEVTVYIRKSEEFPDLTEA*

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