NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182123_1093680

Scaffold Ga0182123_1093680


Overview

Basic Information
Taxon OID3300015303 Open in IMG/M
Scaffold IDGa0182123_1093680 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_31MAY2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019428Metagenome229Y
F076680Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0182123_10936801F019428N/ALLSYTKTCDNTIVQKYPLPTVLLHGQTDADETEDRRFFMEAINKFVHDAILNHNEVFLNTFNNTMKEVVHGFPVDQVGPAYYNIPHPSIQGTNQADTSHQEAAPASNDDIHVV*
Ga0182123_10936802F076680N/AQWDHTIVMVAYNNNDILIVPYEDLPDGGKDVISKAIEEF*

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