Scaffold Ga0182157_1022895

Overview

Basic Information

• Taxon OID: 3300015296
• Scaffold ID: Ga0182157_1022895
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12JUL2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 780
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001863	Metagenome	624	Y
F019427	Metagenome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182157_10228951	F019427	AGG	VINFGTSSHIPSSAKKIAPSIQRICRDIDLHVYNQRLQAANQQIEIPQGYHYGTDYNTLHMIRNLGYQGIQDFNPQM
Ga0182157_10228952	F001863	N/A	VYNNNDILMVHYEDLPDGDKGVINKTIEEFQNKCLLSYTKIRDNTIVQKFPLPRVLLHGQTGTVEAKDRRFFMKIVDKSVRDAISSHNEAFLDTFHNVMKEVFHGFPVDQIGLAYYNIPHPSTQVTNQVSTSCQEAMPAGNDDVQVV*