Scaffold Ga0182125_1004368

Overview

Basic Information

• Taxon OID: 3300015291
• Scaffold ID: Ga0182125_1004368
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_31MAY2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1180
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000434	Metagenome	1147	Y
F012029	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182125_10043681	F012029	AGG	VVHLDLRATTARQVRQLRFVEFDVWFPSRRDERVAEGFYTPLQEDFYNAYLNSGTVFRSQRVYSIESIMAAAGEHICPYLSYLPGLTDLIGRTGVYVPSWVRQFYASLYVDPHHNFIHFAFNGRDYRVMSFRAREILRLQDQLVK
Ga0182125_10043682	F000434	N/A	MARTKNVGGGPGDDDRRPPPRLPTDPKGKATKKVASKKRKYPDAETARAAAVAEAAERAERGGARSGVVIADPPVSSDARTVTARVQRLLGSPPGTVTVEGGQYTIGEGQPQGTSQ*