Scaffold Ga0182171_1018040

Overview

Basic Information

• Taxon OID: 3300015287
• Scaffold ID: Ga0182171_1018040
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_MAIN_01AUG2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 787
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001365	Metagenome	713	Y
F002200	Metagenome	584	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182171_10180401	F001365	N/A	TIGLDIVFNAPMVLLGDEAQVEARFSPFGDSANLDARYVPDLRRTYHRLRDHFGRTGWNS
Ga0182171_10180402	F002200	GGA	MERLGDYGLVKLVSVRLETVSVQDRCTVCAKRTIGLDIIFNALMVLLGDEAQVEAHFSPCGDCANLDAR*