NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182156_1019967

Scaffold Ga0182156_1019967


Overview

Basic Information
Taxon OID3300015283 Open in IMG/M
Scaffold IDGa0182156_1019967 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12JUL2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010293Metagenome305Y
F033654Metagenome176Y
F052306Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0182156_10199672F033654N/AMTDKDDKALVRIRDGLSLKAKETLYIESASRTKSAIFFSSNGNIFLSRFLVSSDKASLEEVADEHILSSSKYSSRLNE*
Ga0182156_10199673F010293N/AMFANTNIENLETIQPNTIGASSTVPSSQMEAISEKVPHLLHHLSYYQLIQSS*
Ga0182156_10199674F052306N/ADSVSIENNPAVVDTQTIDSPVQDTTDGKKIIYLFYPSATIMN*

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