Scaffold Ga0182156_1004928

Overview

Basic Information

• Taxon OID: 3300015283
• Scaffold ID: Ga0182156_1004928
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_MAIN_12JUL2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1132
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000130	Metagenome	1990	Y
F001365	Metagenome	713	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182156_10049281	F000130	N/A	LLGDVGHVESRSVRLEMVLVLVQDRCRVCAQRSIGADIV*
Ga0182156_10049282	F000130	AGGA	MVLLGDVGHVEFRSVCLELVLVLVQDRCTVCDKHTIGSDII*
Ga0182156_10049283	F001365	AGGAGG	MVLLGDEAQLEARFGLFGDSANLDARLVYGLRRTYHRLRNHFRRT*
Ga0182156_10049284	F000130	N/A	MELLGDVGHVESHSVRLEMVLVLVQDRCTVCAQRTIGSDIV*
Ga0182156_10049285	F000130	AGGA	MVLLGDVGHVESRLFCLEMVLVLVQHRCMVCAKHTIGSDIV*