NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182170_1005850

Scaffold Ga0182170_1005850


Overview

Basic Information
Taxon OID3300015276 Open in IMG/M
Scaffold IDGa0182170_1005850 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_01AUG2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014389Metagenome263Y

Sequences

Protein IDFamilyRBSSequence
Ga0182170_10058501F014389N/ALRVEKQKLSESIDEMKALVRSSHNKAEEVITHAEEELALARLIRRGADRDLVQAQKTIENLSGKLATATENWNALWKSFRSVADVLRTPADDGQSWAQFIPRIPTRFQEFAKRCAQVCTKNVLAQVRVLAPEAPLSKIAEEADSQEYLDAVERMEPEVEDLASRVVDSLSIDISFSDDNA

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