Scaffold Ga0182170_1004515

Overview

Basic Information

• Taxon OID: 3300015276
• Scaffold ID: Ga0182170_1004515
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_01AUG2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1099
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010293	Metagenome	305	Y
F011554	Metagenome	289	Y
F052306	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182170_10045151	F052306	GGA	MQEQESDSLPIENDPIVVVTQTVDSPVQHTTDGKKIIYLFYPSATNMN*
Ga0182170_10045152	F010293	N/A	MFADTNVESSELIQPDAIGASSAFPSPQIETTPEKVLYPLHHLSYYKLIQSS*
Ga0182170_10045153	F011554	GAG	MDILPMLEKNIADLVQDADSMQRVFLAIKDNLPLDIIKVLSPLSIIEDQAPKVKKAQRNLSNCEALLAKKDSNRQEAKELAQLIDNLKNSSLRIDLELNQLETKRAELKKELENMKVAI