NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182154_1051415

Scaffold Ga0182154_1051415


Overview

Basic Information
Taxon OID3300015268 Open in IMG/M
Scaffold IDGa0182154_1051415 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_12JUL2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001700Metagenome649Y
F047526Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0182154_10514151F001700N/AVSTRFQKFVKRCAHLCTRNVLAQVRVLSLEFALSKVADEAESQEYLDAVEKLELEVEDLARKIVDNL
Ga0182154_10514152F047526N/AVFKFAFLLTCLLLLGLALRVEKQKLLEGIEEMKILVHTNHNKAEEVITQAEEELTLAKLIRRGADRDLV*

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