Scaffold Ga0182122_1005626

Overview

Basic Information

• Taxon OID: 3300015267
• Scaffold ID: Ga0182122_1005626
• Source Dataset Name: Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_MAIN_31MAY2016_LD1 MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1001
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.39
  • Long. (^o): -85.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060545	Metagenome	132	Y
F088143	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182122_10056261	F060545	N/A	IVEAEDKRFFAEAIDKSVCYALSSHNEAFVDAFHNAMKEAIHGIPVSQFGSTCYNIPDPLTQETNQVGTSHQEVAPAGNGDVQALQGSSEQTLGTTTN*
Ga0182122_10056262	F088143	N/A	MQRVFLAIKGDPSPTLSKVLSYLSSFEDQALKAKKIQRNLSNREALMAQDSSNKQEAKELMRLIDDLKNSSTRTDPELFQLEIKRAELEKELETMKAAIDRRKFTLAQIPDVVKQKKQELLAKVNRSRVIRSSLENNPRTTEEYEPKIAEVDVVRLELLKII*