Scaffold Ga0182005_1066351

Overview

Basic Information

• Taxon OID: 3300015265
• Scaffold ID: Ga0182005_1066351
• Source Dataset Name: Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 988
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F037169	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182005_10663511	F037169	N/A	KQPLPLVLLKIGEQIGIPVEIQDQTTSIVDTEISKLPVEDVVRQLSLHIRLFLRADLTHAEKRALRMVLAEQAQATQ*
Ga0182005_10663512	F001123	AGGAGG	LAKQNEIINEEIAGLHSGNGVSGECSEIKKAFVEPTISVPVDVLEATTFFQAATSGATN*