Scaffold Ga0182005_1057289

Overview

Basic Information

• Taxon OID: 3300015265
• Scaffold ID: Ga0182005_1057289
• Source Dataset Name: Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1062
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1613
  • Long. (^o): -96.6752

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182005_10572891	F002850	N/A	LKGLHDALVRYRHAQRDVTARGQDQLTATRASLEAKASHLRAQLELGQAEYTACQDRAAQADPDNPVDCSGYARAVEQNSGRLEQIRLWQQRIDAEAGEFSGIAGRFADLLENDLPRIEEHLVAIIASLEAARRVRAPVSGP*
Ga0182005_10572892	F004352	N/A	MTARPDQDGDQQLRLLGDAWDKAAEHWRDGPARQFGTAQLTPLLQESRGYLEALCALMDLLETAERETEG*