NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182005_1053932

Scaffold Ga0182005_1053932


Overview

Basic Information
Taxon OID3300015265 Open in IMG/M
Scaffold IDGa0182005_1053932 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1095
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1613Long. (o)-96.6752Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021010Metagenome / Metatranscriptome221Y
F026839Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0182005_10539321F026839N/ANDTATINKESTMKTILMLIAGLMLAGCGSTGNQVHSRDAVNRHYYMVEHTAVDTICACP*
Ga0182005_10539322F021010N/AMKTIVAFILTLLIATDAWAQIDHAHGIVWLPAHQGTLHGSGYHHARYQMGLRNDGVVVWRWIH*

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