Scaffold Ga0137403_10063048

Overview

Basic Information

• Taxon OID: 3300015264
• Scaffold ID: Ga0137403_10063048
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3780
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062584	Metagenome / Metatranscriptome	130	N
F074603	Metagenome	119	N
F104806	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137403_100630484	F074603	GAGG	MLQFSGPVPPGEIPPPTCFEQFILCVALVAISTALLSFFLPRPLFCKLFKIAFPFMPERIGDDDAKD*
Ga0137403_100630485	F104806	GGAG	MPKISLKERKKLDLFHEQRKAKLRKKYPEIHGKKLDYVTHSFEDNDGGGWLYINLYFTDGTNFSMDFSMNNPAIVPRCIEYGDMSTGDYENIRTYYYRGEKR*
Ga0137403_100630486	F062584	GGAG	MTEIDDPEVLRREIRTMLEKVTNPGSLIFFQWLVRRVLANYPMPGDEELRALHQAFIRMHATFRAKKRPTKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPIRAILAIERGRVFDLSPVIDNLTVGLRVEAGELTDKLLDFEKDDKS*