Scaffold Ga0182007_10082874

Overview

Basic Information

• Taxon OID: 3300015262
• Scaffold ID: Ga0182007_10082874
• Source Dataset Name: Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1053
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location

• Location Name: USA: Nebraska
• Coordinates
  • Lat. (^o): 41.1591
  • Long. (^o): -96.4086

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019375	Metagenome	230	N
F091027	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182007_100828741	F019375	N/A	QQRLPQNYLSSDTVAQAAKHFQGSQYLDVSLNEKLYPGSVFKGTKVVFVTDIFSRSAGDIAPNYFIGDGERPGYLGNGTQASIVGCLDGREFSFISVSNSFPANTNPMSASKNLVDKEGNPVSPFTFNMDWGGYFLRYSDKRLSMLRQNTQVKPVRTPYVGTSGSNALPISFEQTVFPDFGFTPMTRRFIPGWTALHPRPPTPSDPTTWTYLYLDAAISRAIN*
Ga0182007_100828742	F091027	N/A	VTVLPRGATDVITIGGEGYAEWRAVASDVTPVQVTITTTGAWHLYDPAFTSVANGKGNAVTSLPAANGRGYLCPYSRGQQNNYFR*