Scaffold Ga0137409_10036892

Overview

Basic Information

• Taxon OID: 3300015245
• Scaffold ID: Ga0137409_10036892
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4711
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001384	Metagenome / Metatranscriptome	709	Y
F033376	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137409_100368925	F033376	N/A	MKSDVEKTIEPRVAAAFEDILAETGSNARHKILQGAQDMVKAVWMGKIYAALPKDKTTIPEYFLDAELEQFLNEAIEECHARISSIAERAKEIL*
Ga0137409_100368927	F001384	AGGAGG	MADIRGVGKKITYSEDNPISAEIEALRKSRDNIKRPPKDDEERERLARWLAHRGRDELEVTVGTACYAMAHFEMDSEWRYFLAEHAGTEAGHGWGYIRQANAIDPGRDHSKPDPEFERKYGLTPRIEHHQIMKRDFLSYIFSGNLWPYGHVTAASIQSIQITTPKLLDFEERVVHAEERSHHDAILQKVHDYVWEQIEIWGEAPIRRRIGEIEKQALNSRPRTVFDPPRR