Scaffold Ga0137409_10021713

Overview

Basic Information

• Taxon OID: 3300015245
• Scaffold ID: Ga0137409_10021713
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6314
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014657	Metagenome	261	Y
F060301	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137409_100217134	F060301	GGCGG	MSQRLTGFDICLPGIVAGLTLAAVLLAMGEVEFPDPFRQVFPRQTLVLLSVAIGAASAVGLVSLFFHSRGDEEKPRQHISSNDSKNKNALPSGGTDAF*
Ga0137409_100217137	F014657	GGAGG	MKHLITVALIALMLTACGKREEESEVVPPGFCKAEAECQPTADRQNQTQEQLRQDLMAQGVHEQYLPCGKYKTAKAPNGFWQVTRDTAGCPPTASQQDPHPELGKAKKSAK*