Scaffold Ga0137409_10021082

Overview

Basic Information

• Taxon OID: 3300015245
• Scaffold ID: Ga0137409_10021082
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6410
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002103	Metagenome / Metatranscriptome	593	Y
F002840	Metagenome / Metatranscriptome	527	N
F012791	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137409_100210822	F002103	AGGA	MSTDEHFRTDYEFLKGVDYIFVSLDRNLSGEECHELAEKYFETHKQMTLPGQVLLVDLRPAYRKPLADVTPQFRAVSKGHTFTPQR*
Ga0137409_100210823	F012791	AGGGGG	MLCVKIYRMQAKPEVIGELRFDGRRVTTAKAKDQQDAKLLKRLLRRPAILRGGLVNDVFSKDNPELFLRLLCQTYRSHFFWASEAEAA*
Ga0137409_100210825	F002840	N/A	MALRPPVIRDQDRIDVRLTGEAEYRIPFTFIEALNEGTLFDRPAEAFLDAARERRLFHVLNRTTDNIIGTGIIQASGGEKSAKEAEVGGLMFHPAARGFGLCSLLVKIMMVYAIKESGRDWPGEEYLAHVVDGNGLPLHSLLEAGFRPIEGFVFDREAIGKLVLSLWKFVNEDHGVITRSDPGGDIRMTVDFSDVIPPTELNI*