Scaffold Ga0137412_10034290

Overview

Basic Information

• Taxon OID: 3300015242
• Scaffold ID: Ga0137412_10034290
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4147
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035434	Metagenome / Metatranscriptome	172	Y
F050722	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137412_100342902	F050722	GGAG	MSAKYSIRVEKDGVNVRARYDIRIPMDTTELLASFELNVEGKNLIGTFLPQKAFTGTKFCILTSPSADASVTFTITTNGTWTADGSDKLLGRKRYDDVSFSN*
Ga0137412_100342908	F035434	GGAGG	MGWRWLVGEIDVPRPRQNGLLEQGLHILVPAGSALVAGELENRVDGAEPIDQEYRTQNYLRRIVALTGATQRGNSYVLDVGKTEFSVRNGYVRRLRDVTDPNSKYEETCFYSAYKGMSKAKQIATVLLQLTNNPALFDKWAAQSGAYKSDGQMFTNAQ*