Scaffold Ga0137418_10059771

Overview

Basic Information

• Taxon OID: 3300015241
• Scaffold ID: Ga0137418_10059771
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3491
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F002523	Metagenome / Metatranscriptome	552	Y
F004910	Metagenome / Metatranscriptome	419	Y
F005165	Metagenome / Metatranscriptome	410	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137418_100597711	F005165	N/A	MNMSDIIGNDAAHPEWRQLCQAALFELNPVKLLERIAHARNTVLDRIEDGYSKPPTSEQAALRDALATLDCLRRITERQNGYQSKAS*
Ga0137418_100597712	F004910	GAG	VSVRYSWQESYHAALLETDWTKMVELVQKAESDLHKRRLELTQDHNGTQEERAAVVNALNDLRVLRMDAATWRDRQNLK*
Ga0137418_100597713	F002523	AGCAG	MLVIVSVRRLDNDRIEVGVARPQHDSNPTHNYSSEKEVRAVLSDFGISEELMASHLKLLARMGTGEELKFPPMDVPQNQLLSRGFSLVKSKGAAPFW*
Ga0137418_100597715	F000175	GAG	MANLSSSSTARKLAQYDGGKRVPATISAIADAVRWAEEIMKEIDERWPERKGC*