Scaffold Ga0137418_10002005

Overview

Basic Information

• Taxon OID: 3300015241
• Scaffold ID: Ga0137418_10002005
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18705
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011878	Metagenome / Metatranscriptome	286	Y
F062651	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137418_1000200520	F062651	AGGAGG	MQKNILILSLAALLACAHEEVAQTPTERDWEKGLDAARGPQIAPVGPIDTDQGAYNYIRRREQEHDLGSRMTAAGLDEIIGASSQVLASAMALPLFRAGVYLGQPRLIERGCTSARRVTHSALRASGNVDAVLQGCGALNAAKQGPSDSCGDGRQKLRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNIADAINDAFLRGVQAVRPVAQNP*
Ga0137418_100020055	F011878	N/A	MTRGTLGGVAMGRRIIMDDQVVEATPVYVRQEARLRLEEISEGMEGIPPDSAFWASIRVSRLCVVVRGWSFFYTCDAERLRVTEVRAS*