NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0172382_10213466

Scaffold Ga0172382_10213466


Overview

Basic Information
Taxon OID3300015214 Open in IMG/M
Scaffold IDGa0172382_10213466 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029451Metagenome / Metatranscriptome188N
F054066Metagenome / Metatranscriptome140N
F062734Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0172382_102134661F062734N/AGIIAIGHNPVSALTITGEPSGDQIHWEIADGEGPYTVFVNGIEIVTGYPGTVLSTDAEPGRQYTAVVMDNESIADATVTGEYYTYPFWVWMLFAALVACLIVSIWLPYAAFGAAIAGGFLLLLIAPNPDYAAYLRIFAGAGFIVGLAGLAGRMQG*
Ga0172382_102134663F054066AGGMFGMSRKPKELNRFRVGKGSPALKSVMYRMTNKSYLDIRIYRGYREVTRIVTPDTGMRRFVVDGVGAFVMPNEDQMLRQLHDRYALYINYNINTSAPGEVTDELEPVAFVYPPLSPSEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFVLILLFGGA*
Ga0172382_102134664F029451N/AVREMAVDFEDLIASTSSTSGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYNRYDNRVLTAVCEGTLSGRISLDGKSRDEIIRIFQAVGNTGQEQPVGRGRGILGRFDY*
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