Basic Information | |
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Taxon OID | 3300015214 Open in IMG/M |
Scaffold ID | Ga0172382_10141814 Open in IMG/M |
Source Dataset Name | Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2091 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 43.442 | Long. (o) | -80.577 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029451 | Metagenome / Metatranscriptome | 188 | N |
F101228 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0172382_101418141 | F101228 | N/A | CNIATRFSDLWTWTAERWAYFTVLGLVYLLIYYVSGSAMQAVYGIAIFMCMWLGALWVNRLPRKERLWGKRIVGITMILLAIVVAITYNPVSALTISGNQDGDQIHWKIADGDPPYTVFINGVEVVSGYPGTVLSTDAEPGRQYTAVVRDNETIADATVTGEYYTYPMWVWMLFAALVACLIVSIWLPYASFGAAVAGGFLLLLIAPNPDYAAYLRIFAGAAFIVGLAGLAGRLNG* |
Ga0172382_101418144 | F029451 | GGAGG | MAVDFEDLIASTSSTAGKPSIIEALLSTVDAIFTNNRMLQRSRLSSRNIRGVVRVIGSQAFLRARLERSYKPFLDPVTGEFTYNRYDNRVLTAVCEGALSGRISLDGKSRDEIIRIFQAVGNAGQEEPVGRGGGILGRFDY* |
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