NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167644_1032144

Scaffold Ga0167644_1032144


Overview

Basic Information
Taxon OID3300015206 Open in IMG/M
Scaffold IDGa0167644_1032144 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.057002Long. (o)-50.459694Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0167644_10321442F048424N/AMILTPELEDVANRVHILRDRVLVKVLPYVHPTLETPGIEINKGVVIGVGYGRRKRRKTEFKQSISDGAPVIGPGGKVMQFAKSKLSGRSLWFEDGEESGAIIPMTVKPGDVVEFSFRNITLVDFDRIGFPGIGHLAFIWQKAVYSIDPDESLNECLMWQQSAGYDRKGNYMSGAEDWHRA
Ga0167644_10321443F102028AGGAMSEGYGNLGKLAEEIPGAPKHAWGKWPPVKPETVAPLRDGRPDLYNHQPTRFVSFNEAKARGWKHFWTGEPCVTGHRAARYVRNGSICVDCTRIEQGHLPVYGKGVPELEEARRRKYTQKHTAAITAPAQPSNAEKLFLTKYAEHKDFSTAAEACGRSETEFLAILSWNETFRDAVNRLEESIGVARTQQVTDEFDWTDEKKRAFLITYANTADVKQALRSVGATNVQFHKELSVDAEFQRGFDDATNIARMVFDHAASAAATKGDARMLGRIAANFFPEKFGENLKMDLKVTQNLSLEQAHDQITHLLSRFDRQGLLPAAFVADDAVEEAEYQLVEPAGVEQISQDLERPSADTGSDPNSDLVSGP*
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