Scaffold Ga0167644_1024160

Overview

Basic Information

• Taxon OID: 3300015206
• Scaffold ID: Ga0167644_1024160
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2594
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.057002
  • Long. (^o): -50.459694
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030254	Metagenome / Metatranscriptome	186	Y
F031230	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167644_10241603	F031230	AGGAGG	MKHALTGILLAGATCAVVLATPASAQVAGNPGDLHTPTPYMNEVRTNSYGYTPGYGGLLGPLGVLTAPSAAMNGGPSGGACGVSQDFNGRLTALCGL*
Ga0167644_10241604	F030254	AGGAGG	MNNALLALTAAGFAGLSGYGINGQTSPIQTAQVVNSTPDYTQEAGVFSQWLTSTAPQCVAISKISSVAHLTKLTHEQFQFVRALYIAIPPISRALPPGDSAMIASANGHSMVALVSGGETCARFLAPDFVLSMLTQVGKGETEAAGDPI*