Scaffold Ga0167644_1001108

Overview

Basic Information

• Taxon OID: 3300015206
• Scaffold ID: Ga0167644_1001108
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20469
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.057002
  • Long. (^o): -50.459694
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002209	Metagenome / Metatranscriptome	583	Y
F005455	Metagenome / Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167644_10011082	F005455	GGAG	MQDEAEITISGVKLTHEESMTIRVAVDTLANVLAEGLEENETRALTDLYLTSLSRIQTLLESRQPRKQ*
Ga0167644_10011084	F002209	N/A	MNKITPRDFRNAFDAVMHSDHDSFRTAVGFETKSYNFFMRTTIYPKVARRLGLLSWNKEYYTLDGMLYEKRGMDDTGKYATYANWISVAIEHENDSSRAHEKMNKLQSFNAPLKVLITYAAEGAASETLLRKYENLIKASDVFNDIATLRQQLVILGTPKTVLEWRYYAYENDGFVLMLPG*