Scaffold Ga0167644_1000539

Overview

Basic Information

• Taxon OID: 3300015206
• Scaffold ID: Ga0167644_1000539
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35072
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (57.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.057002
  • Long. (^o): -50.459694
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010157	Metagenome / Metatranscriptome	307	Y
F010670	Metagenome / Metatranscriptome	300	Y
F062249	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167644_100053914	F062249	N/A	MKKLPAFGASILLLVGLGGCSAEPKELSRQTSPNQTLVAILMESVTGGASGSVHEDIYVNDKGVPLNLDKPVFSGVGCDHLSFEWANDYTLQVHYETTCAISQFTNRWYRPSDVAVGRPNPIEIILVRS*
Ga0167644_100053939	F010670	N/A	MRVWNRTKFLIAVLAAVTLIQPALSVAGDKSTDSRAAPSSFVPHPHTNSHVYGSPIQPAVVGHARSSHHKQTPKKRSSVAARSHAIR*
Ga0167644_100053944	F010157	N/A	MALGASFSFQPPSNEAIPMNSEHPQGFSELPVRGRQTSDDRRDGEIAGNHAPSDDAVNREATVLVRGETVHDQDPKSPLKDKEKSPRKEVSEAKIKMQSRLPALDDDSDVGVQKEQVVIRDGKADLAFTGKLLASAAPPTAPKGQWQEYRIYETNAGKQVFSKVTRRVIAEEQDTHEAEVFDPSPSSVPSQLLRSARDLAHSRPMTWMDAAVAFFGYDPLAKALYRKLSGQFEEHIG*