NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167644_1000043

Scaffold Ga0167644_1000043


Overview

Basic Information
Taxon OID3300015206 Open in IMG/M
Scaffold IDGa0167644_1000043 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)126221
Total Scaffold Genes135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (64.44%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameRussell glacier, Kangerlussuaq, Greenland
CoordinatesLat. (o)67.057002Long. (o)-50.459694Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000887Metagenome / Metatranscriptome848Y
F013326Metagenome / Metatranscriptome272Y
F021578Metagenome / Metatranscriptome218Y
F062774Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0167644_1000043109F062774N/AMKAGEKYFLLTPKGIEELRGRAPKLDANPRSVLSLIEQGLTSADALLQRSKSTRDEMIDVLRSLLSNGFISTALSDGTVKAPTPEPAPSVADSVSERLRLKQGVSPSQARFALSNFCLDQFGTAGKDLADVVDLCVDVAGLQLALDSIRSEVKRICPDRRPALVACVREINETDYDG*
Ga0167644_100004339F021578GGAGMIKKLRLLVGAGMCAALCGCVVGSGPCLWLQVRHDFTGHVHFREFPRADGVDTAPILILDKTQYIYAPPQSFLCLPAHDVQLVGVTEFPDSIGENSHVIVDGKILEGVAQGQYTRFVIQVNGILPLRTPEPAH*
Ga0167644_100004349F000887GGAGGMRKLFKLLIPISIVAMSGCVVAPYGYHRGYYGPPVAVVAPAPVVVVRPYR*
Ga0167644_100004378F013326GAGGMADRDAPARSLIHTRLAQSREELRAVLDPPRRANGGGNMPDEGPGGFPRSRTMRVLLSSRGLGTMGALAGGLLLARPALALRLLQFVPAGAVAKMLMAKALGALKSKSAD*
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