Scaffold Ga0167644_1000018

Overview

Basic Information

• Taxon OID: 3300015206
• Scaffold ID: Ga0167644_1000018
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158206
• Total Scaffold Genes: 166
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (57.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.057002
  • Long. (^o): -50.459694
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003382	Metagenome / Metatranscriptome	490	Y
F015179	Metagenome / Metatranscriptome	256	Y
F024147	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167644_1000018154	F024147	AGGCGG	MASDFKEPADDSSFTFAVQELRRAKAAHSLALDPGPKKVSYKEQGSDPYNSSGSFDRTKNWTRVGKR*
Ga0167644_1000018156	F003382	N/A	MAYNFRRFVRSSPWAAELVAAAVGLLLGLVLMPALIFYAGLAALGRYEGAGLGRLYASLFEGLREASIASWVVLLGPYGLYLMFRALRGWWRASAKFD*
Ga0167644_100001856	F015179	AGGAG	MAARKTQWMIGILASATVAGCATAPTGVVPAGQDAYHVSVFGARYETQADTNLKALRVAGEYCDNMAKHVMFRQSAETSEHAWSPKQEDLTFVCIDAKDPAYMRAAVEHNPPVVAQQ*