Scaffold Ga0167644

Basic Information
Taxon OID	3300015206 Open in IMG/M
Scaffold ID	Ga0167644_1000003 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	252093
Total Scaffold Genes	226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	141 (62.39%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Russell glacier, Kangerlussuaq, Greenland
Coordinates	Lat. (^o)	67.057002	Long. (^o)	-50.459694	Alt. (m)	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F024589	Metagenome / Metatranscriptome	205	Y
F031576	Metagenome / Metatranscriptome	182	Y
F061595	Metagenome / Metatranscriptome	131	Y
F096632	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

205

Metagenome / Metatranscriptome

182

Metagenome / Metatranscriptome

131

Metagenome / Metatranscriptome

104

Protein ID	Family	RBS	Sequence
Ga0167644_1000003179	F024589	GGA	MRTQKLAVVALVVLAGLWAAAQFSIASAADGEQYLGIWKGTWEGGGAGGRFDLTFARGSDGKLGASVSVGTDMGDYKANLSTVTLAGDKLAGAYDYPPDPQAEVTINGSFDPKTATGTWSLGPKGQSGGQAVAGTWKVSKQ*
Ga0167644_1000003191	F031576	N/A	MLLSMAADRAMPEDVRNVTGLPAYPHLNSAVMDGVYRTDTLGHWCMRFWASASDSLTTVEAWYRKSMKGASEIDLAQDTIYKKYNGLVGIKLAIGIDYVVVYQAAGQAPTSIDLYRCSPIR*
Ga0167644_100000369	F096632	N/A	MTISDFLKEPLQGKTSLSRVVWLYGVVGSLLVGAVELFLDPENQFVMRVYTILGFFFGVYVTLATYRCAKNCKSPLLARVVRVSAVLTLLLLPVLTYLDLTGALALTDLMQGQLPE*
Ga0167644_100000391	F061595	N/A	MQPLMHLDRDLELEFIREFSVHGELLKGAKPDDRRERIRIAIYVHNLLHQPFRDSGMDYAAAYQKCYRRPIELRRTVRHEPKPQADAASDDEEDRR*

Protein ID

Family

RBS

Sequence

Ga0167644_1000003179

GGA

MRTQKLAVVALVVLAGLWAAAQFSIASAADGEQYLGIWKGTWEGGGAGGRFDLTFARGSDGKLGASVSVGTDMGDYKANLSTVTLAGDKLAGAYDYPPDPQAEVTINGSFDPKTATGTWSLGPKGQSGGQAVAGTWKVSKQ*

Ga0167644_1000003191

N/A

MLLSMAADRAMPEDVRNVTGLPAYPHLNSAVMDGVYRTDTLGHWCMRFWASASDSLTTVEAWYRKSMKGASEIDLAQDTIYKKYNGLVGIKLAIGIDYVVVYQAAGQAPTSIDLYRCSPIR*

Ga0167644_100000369

N/A

MTISDFLKEPLQGKTSLSRVVWLYGVVGSLLVGAVELFLDPENQFVMRVYTILGFFFGVYVTLATYRCAKNCKSPLLARVVRVSAVLTLLLLPVLTYLDLTGALALTDLMQGQLPE*

Ga0167644_100000391

N/A

MQPLMHLDRDLELEFIREFSVHGELLKGAKPDDRRERIRIAIYVHNLLHQPFRDSGMDYAAAYQKCYRRPIELRRTVRHEPKPQADAASDDEEDRR*

NMPFamsDB