Scaffold Ga0167650

Basic Information
Taxon OID	3300015203 Open in IMG/M
Scaffold ID	Ga0167650_1000238 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Bristol

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16188
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (69.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

16188

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (69.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.900853	Long. (^o)	18.44175	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Storglaci?ren, Tarfala, Sweden

Coordinates

Lat. (^o)

67.900853

Long. (^o)

18.44175

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167650_100023818	F034408	AGGAGG	LQPHDSQIRNLALYAPKIALGMMAGVPRVPFIVDIPLQFSSSTVNAPPVVQNFNNNLTQDTIIERVSHNLFQQNSFPGSPLQSLYFNQLKQSGATGVGIQMAVYGGPKYDVTSSAFTDLGNLVDVFAVAWPGGWPLQKQSNVKVSAILTQTPVSVPFNVTLTFLGWNFLSKELDDMSDSEARDRLRKLGIETPDLKILLSNA*
Ga0167650_100023820	F091541	AGGAG	MSTKSIIGRTIRKFGQDQERPKRMPFGLGVTPGGAGTLEAVDKCLRCSFGNIPVIEEVVWTIPLPLTSEEALATLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGIGVHVFCEPMSFSTIGNSFTAPPNTVVPPPSPDVFTTNDLLHGAFPATVATDGSTYTPAVFEFGADVWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEASGTSEVAIIEFVAQVNATYRSKGSATIFIPVNFRRVGSVTTAGAGALNVGVFHPTRDFDLAPVTWGGLRWQGYGCRGQMYRPIESPCFLERGIPIGMLFVVQDAVHQALMLQAVTINNEPLGTNVSVDENFSDTTGTGAQAMAEQTLDAVPLLAAQTVNTSRQIFKGGILKLAIKIKGWEMPGGWKAYCSTNMPQIMATAAP*
Ga0167650_10002387	F074512	N/A	MNGFLLISALVGTTLLLVHGTIFAGLRRLWPALFKCAQCVGTWVGAAAGASGLVSMGHGRVLDAVIVGAATSFLSLLAYAVLVRLLGAPEEGV*
Ga0167650_10002389	F061612	N/A	LKESVMPKLIHQETMCCGMKRCPVVKTFDDGSLELSDDDTELGSVGVIKIRPEAADRLLELLSARKASK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0167650_1000238

Overview

Ecosystem & Geography

Associated Families

Sequences