Scaffold Ga0167638_1000633

Overview

Basic Information

• Taxon OID: 3300015197
• Scaffold ID: Ga0167638_1000633
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7797
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Russell glacier, Kangerlussuaq, Greenland
• Coordinates
  • Lat. (^o): 67.155586
  • Long. (^o): -50.08499
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009643	Metagenome / Metatranscriptome	315	Y
F012393	Metagenome / Metatranscriptome	281	Y
F019018	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167638_10006333	F009643	N/A	VSNAWKARLDGALRGGEVAGLYFTTALLIVVEFCFVCWLNRIQIPDVPNAGSEFIVLPPWYQKPRFEVSLLLTILAGLLFSVCWGLWDLWQKRTKTGSWEKAMQSVRQRVKTTTFVAALTGFQLALVTWLR*
Ga0167638_10006334	F012393	N/A	MVEDRQVTTEDVLEAARRRRRLCDDVEVDDPVTADAVLTAFEARMEQRLDLGVVNRALNVFLEPRNPFEPERTRKPKMETVIFGMLFALVVTAFLFFNLAAPRLLVHP*
Ga0167638_10006337	F019018	AGGAG	MLRSKMATLLTIVSAMLISAGMTWQQRLLFIGGIAFGVAVEALPSFVDDLKERVAEWRRLRQLTIRTKAA*