Scaffold Ga0167658_1000011

Overview

Basic Information

• Taxon OID: 3300015195
• Scaffold ID: Ga0167658_1000011
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 163672
• Total Scaffold Genes: 189
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 151 (79.89%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.865505
  • Long. (^o): 16.714941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F001473	Metagenome / Metatranscriptome	688	Y
F001949	Metagenome / Metatranscriptome	613	Y
F003175	Metagenome / Metatranscriptome	503	N
F004392	Metagenome / Metatranscriptome	440	N
F008206	Metagenome / Metatranscriptome	337	N
F008922	Metagenome / Metatranscriptome	326	Y
F009767	Metagenome / Metatranscriptome	313	N
F020609	Metagenome / Metatranscriptome	223	Y
F069868	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167658_1000011119	F001949	AGGGGG	VSYFNFEFNSKMATSLVHTLNRPYKGAQKFSATAPDAQGTLVIWARDPEECREHLLNALFDLIFARNRVGAALFNPPCIFCGGKTQSRGRNSSGTRGWRCMNPTCQRSFVIDRSFRGGINHPTQSKKPDFHRLVFIDGKTIREACDALGISMSAGDNWYQKMLTVRKRIDHKCPCGKELRHRGSCRFRQEYLMPKDKAPDENRTADCRKVGSERTGKAPAG*
Ga0167658_1000011136	F000586	N/A	MAPDIIQADMNHADPNTMRARARQATEILKTQLLGTGAIEPLVALYFDDHIEQVEFQDPSVLEHFDVRTARSFDYLRTLVRIKNPQAAMITLDVQMGPFESDERDVLADTTAVFLMLDSPLLTIQVLLPYRRCGGRTAVSNVHYTEMPGAEGDAPCQLFKVFSDVPLSVC*
Ga0167658_1000011140	F020609	N/A	LQQAAGLGFRAETLGFDLLIAQLVRDRILEPIVSSPFHFQIRRWNWTNPESVYAADDRLSLIAISREEQTARFRMVGLLSARISNPRLPEKRVQQIRKERDELERIYEATWLELENAIGSNAAEAIRKSVEETTEACAVQLELPLEKKRNFDLEGEAKCNQ*
Ga0167658_1000011144	F003175	GGAGG	MNRIELSGKSQGKGRNGYFQLHSVELINIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVESRPPVASIEHGVLVCECGHRGTPRLEESGYQVSHTLVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCNGCGKLHPLPPELHIDWR*
Ga0167658_1000011145	F008922	AGGTGG	MTTKQRLACGTAILRSIDARRQRTGNRNELLALEQAIVDRELIELVTGELCDEKRKLAGDRVRKRNVPAATRATGALDEKDLRRANR*
Ga0167658_1000011150	F069868	N/A	MTPSLAGNLRTPNPADMRQQREQHADYDQLNAASARDASRRRE*
Ga0167658_1000011161	F009767	AGGAGG	MRTLYYVNAGSGWFGFYLDEGALALANDGARFNSFGAVLAWAGEHDFEFVAKCEPEGSARVATEMRRNGGRI*
Ga0167658_1000011169	F001473	GAG	MESEYQTVGQMYERLRLMIRQRNDTGFRFAMTDAVLEPRNPFEPASKRRPKSVVAITLILVLVLALIFLYFSFHHAR*
Ga0167658_1000011173	F004392	AGGA	MPVNGPETIADSKPSQPVPSEGRSVRAARNAKPAVGRGASTRRRRDQQDSSETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNNPAS*
Ga0167658_1000011185	F008206	AGGAG	MSSWPFLFAAALAIWLLLKGPAAKTPLFVQIVCRIAIVFFAYCGVLYLLKWDPFWKWMLSTGLMNRNTAEGFLILVSTIVWLIATFRIAFRGLRFRALGARSVGPESRVARQETNPPSLSLKNIAIFHYFFYFFSRK*