Scaffold Ga0167668_1011334

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167668_1011334

Scaffold Ga0167668_1011334

Overview

Basic Information
Taxon OID	3300015193 Open in IMG/M
Scaffold ID	Ga0167668_1011334 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2014
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Rabots glacier, Tarfala, Sweden
Coordinates	Lat. (^o)	67.872223	Long. (^o)	16.713705	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022467	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167668_10113343	F022467	N/A	MKDYSNHFRELVKRQLVDDPRILVPRGAQDMMILVTWRLSSDPFRPSKRSRMIRIVISQEALEEYARGSDAVRLACDERFVAWFKLQLSAFDPHHESPLGVEPPPVTWPVSTAVLNN*

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