Scaffold Ga0167668_1001140

Overview

Basic Information

• Taxon OID: 3300015193
• Scaffold ID: Ga0167668_1001140
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5424
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.872223
  • Long. (^o): 16.713705
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017275	Metagenome / Metatranscriptome	241	Y
F091679	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167668_10011404	F091679	GAG	VFAIILFFLLSHREPWVLEYHCEGSSGDFCTDGGHGAEKRFPSKQEAIDWIQGNYIYWPEALRHGDVRMACVVAYLDNDDPDPITRLRKEVDCDTQANLDKKRGTDTGWSDRWSDQ*
Ga0167668_10011406	F017275	GAG	MTLTQIAPSFWGNYGAAMIALLGFLVNGVLTYGAAQKLAGQREEQRVADQEWKKEKHAQDNLRDIAIAALQAMGGSHEATVKGIQGQLLLIQAELQALRNRAGVKG*