Scaffold Ga0167668_1000037

Overview

Basic Information

• Taxon OID: 3300015193
• Scaffold ID: Ga0167668_1000037
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19231
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Rabots glacier, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.872223
  • Long. (^o): 16.713705
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002774	Metagenome / Metatranscriptome	531	Y
F006194	Metagenome / Metatranscriptome	379	Y
F012406	Metagenome / Metatranscriptome	281	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167668_100003720	F006194	N/A	MTGRPERQRAGSKRDERAARNAQSKAYINLAKALAAVFSAGVYSKEDLQAAVCIYVSEMKEAGETGEGVVRAAQSMVHEIGARFPSSERTQVLLADMVTWCLAEYYRESA*
Ga0167668_10000373	F002774	GAG	MHARGILLLIVAGAVLATGACGRNGEDDSRTRINVLDSAFTQSWQTMQDTGVVYRIEVISPLGADTIRNVIPPAPVVVGDTLVIGLIQVSEDSSTPQRQIFRARLGQHRIETKPMPSDVWASYQDVLVSPDGRYVAYVGEDTTPENPGTYAVVRNLASGEIVAKGPGGGGCDCDEDFNHARWFPPDSFEIAVAHTNTKAGWERVSGKASARRIHVDTLTDEPDWH*
Ga0167668_10000375	F012406	GGAGG	MNQESFEEQQEALDPHRREERDSAALEIAGRLRQKAVLLTGRETGAQLDDLLTAVDRFEAGVIARGGDLFVNSPTSHPPEDPDFVIPQRVPGEDPEAYAARINAAAGRLEKADF*