Scaffold Ga0167646_1025853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167646_1025853

Scaffold Ga0167646_1025853

Overview

Basic Information
Taxon OID	3300015192 Open in IMG/M
Scaffold ID	Ga0167646_1025853 Open in IMG/M
Source Dataset Name	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bristol
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1464
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location Name	Storglaci?ren, Tarfala, Sweden
Coordinates	Lat. (^o)	67.899243	Long. (^o)	18.344347	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005040	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167646_10258532	F005040	GGAG	MAVKVVVKPDSRYLQERSGAFRPIENLSITASTPAYPAVLHRTRRTMILADDHTHAVVALDKEMLVSRNDHLSVVLIAYAEPTEATWKALEQHMESERSTAEAAREAKGRALLERKRVKAAQIQ*

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