Scaffold Ga0167646_1002921

Overview

Basic Information

• Taxon OID: 3300015192
• Scaffold ID: Ga0167646_1002921
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5729
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.899243
  • Long. (^o): 18.344347
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025793	Metagenome / Metatranscriptome	200	Y
F027915	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167646_10029213	F027915	N/A	MPKDRIRRFRLAPDVLVVIQRSSAHPVEYAIMLLVERDRESHTVRIFDNAHDPAEHHEHRFIGSEKQDPIITRGPVNDAMHAAEVKLRGGWFDIVRSWENTR*
Ga0167646_10029214	F025793	GGAG	MSTVYDKTWDLFMAASMSDDDLGYPDEVEFIPGDQEWADDVLWRSLTEGRPTVLVSENAELLLVPHRRTLIDRLRGHVAVNVAHRTHGHAAPFATASRLGRHPVRQMRELAHA*