NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167651_1003023

Scaffold Ga0167651_1003023


Overview

Basic Information
Taxon OID3300015190 Open in IMG/M
Scaffold IDGa0167651_1003023 Open in IMG/M
Source Dataset NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4a, rock/ice/stream interface)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3999
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.900879Long. (o)18.43474Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004299Metagenome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0167651_10030232F004299N/AMRRLLRDALPLRHGEWGLALFLYFLLTVMVGADWVGKLGADALFVKRYGVQNVPFMYIITPIAMLAVSALIFFFIDRMRRRTMLLVYVAAVTVFSLALQYAITTNVIGNIVQPISYVFAHGVKETIYILFWVYAGNLYDAEQSKRMFPFFAGSVLVGKILGGFVGAGIAPIIHAENFIGAQAVGFGVCFIALMLYRRLPEGRSGKVEDKHRPEGIGATIRESVDGYRTVASDPLLRTFGVGVFFWYFLMQFANFLYLLGLDASSAAAALATDVGREDLFSQLYASVYTSSSLVALAIQSFITSGLLRRIGIAWVLFFLPLWYVFTYAAAALDPNGLTLITGVALQLGERIWIPALHRPASELVYSQVNAAIRPRARAFLSGGVNAFGNMAAAVALIVGLKYSDVQLLLATGTGLSLVYVYNAWHTRRLFGQRIAQNLTSPDPDLRRNAADMLSSEGGAVPEDVLRTLGPRIPADVEHGVRLALTRRGILAVAADVTE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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