Scaffold Ga0167648_1039968

Overview

Basic Information

• Taxon OID: 3300015171
• Scaffold ID: Ga0167648_1039968
• Source Dataset Name: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Bristol
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1102
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location

• Location Name: Storglaci?ren, Tarfala, Sweden
• Coordinates
  • Lat. (^o): 67.900853
  • Long. (^o): 18.44175
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007106	Metagenome / Metatranscriptome	357	Y
F024765	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167648_10399681	F024765	N/A	ERKPAPLTGEFLALHPRPFPGFRVRWIRRIEWEGQLHALLWGTSLSPAQEALGESSPLWATQRNYVGLWKLLPATAARPRRWKPLWERLTGGEDEDEPQRVLLVDIRDVTNDGAPDVEVELSCESCGTTANELIVKTVRAGKLVDLLSKRDLYHARVELLQNQIRIHEPEGEDDQGVTVSTYAYDRGKGAFVLAREERAPAPDR*
Ga0167648_10399682	F007106	GGAG	LAPWLEHAALVKKKMKDRGFKMADRVQICEKCDEYAEETWALKGGQGLGGRDICACMNCGRARSWKGSGTARSVEEPFDLMAFLGIQV*